https://home.cryonav.org/index.php?action=history&feed=atom&title=CryoNAV_Core_Concepts_Workflow 2026-06-24T19:22:05Z Revision history for this page on the wiki MediaWiki 1.43.1 https://home.cryonav.org/index.php?title=CryoNAV_Core_Concepts_Workflow&diff=62&oldid=prev 2026-05-20T20:30:28Z

<p>Bot edit via cryonavedit.py: migrate to sidebar-target titles</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en-GB"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 22:30, 20 May 2026</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">{{DISPLAYTITLE:Core Concepts &amp; Workflow - </del>CryoNAV <del style="font-weight: bold; text-decoration: none;">Wiki}}</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>CryoNAV<ins style="font-weight: bold; text-decoration: none;">'s design reflects the physical structure of a cryo</ins>-<ins style="font-weight: bold; text-decoration: none;">electron tomography experiment. The two pages below cover the mental model needed to use </ins>the <ins style="font-weight: bold; text-decoration: none;">platform</ins>.</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">&lt;!</del>-<del style="font-weight: bold; text-decoration: none;">- This page provides an overview of </del>the <del style="font-weight: bold; text-decoration: none;">Core Concepts &amp; Workflow section for CryoNAV</del>. <del style="font-weight: bold; text-decoration: none;">--&gt;</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>'''<del style="font-weight: bold; text-decoration: none;">Core </del>Concepts <del style="font-weight: bold; text-decoration: none;">&amp; Workflow in CryoNAV</del>'''</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* </ins>'''<ins style="font-weight: bold; text-decoration: none;">[[CryoNAV Data Lifecycle|CryoEM Data Lifecycle]]''' -- the hierarchical data model from grids to tomograms, and how cryo-FIB records are linked into it.</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* '''[[CryoNAV Key </ins>Concepts<ins style="font-weight: bold; text-decoration: none;">|Key Concepts]]</ins>''' <ins style="font-weight: bold; text-decoration: none;">-- processing templates, immutable processing branches, the curate-before-reconstruct philosophy, and the project-based collaboration model.</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Understanding the core concepts and the overall data workflow within CryoNAV is crucial for effectively utilizing the software. This section explains the fundamental principles, data organization, and how CryoNAV supports the cryo-EM data lifecycle.</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Dive into these topics to grasp the fundamentals of CryoNAV:</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">* [[CryoNAV_Data_Lifecycle|Cryo EM data lifecycle with CryoNAV]] - An overview of how CryoNAV manages data from sample preparation through to archiving.</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">* [[CryoNAV_Key_Concepts|Key concepts in CryoNAV]] - Explanations of essential CryoNAV terms and entities, such as projects, datasets, and metadata standards.</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">&lt;!-- Navigation back to the main page --&gt;</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">----</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Return to [[CryoNAV_Main_Page|CryoNAV Home]].</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[[Category:CryoNAV]]</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[[Category:Documentation Sections]]</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Core Concepts]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Core Concepts]]</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[[Category:Workflow]]</del></div></td><td colspan="2" class="diff-side-added"></td></tr> </table>

Admin https://home.cryonav.org/index.php?title=CryoNAV_Core_Concepts_Workflow&diff=16&oldid=prev 2025-06-20T22:03:16Z

<p>Created page with &quot;{{DISPLAYTITLE:Core Concepts &amp; Workflow - CryoNAV Wiki}} &lt;!-- This page provides an overview of the Core Concepts &amp; Workflow section for CryoNAV. --&gt; &#039;&#039;&#039;Core Concepts &amp; Workflow in CryoNAV&#039;&#039;&#039; Understanding the core concepts and the overall data workflow within CryoNAV is crucial for effectively utilizing the software. This section explains the fundamental principles, data organization, and how CryoNAV supports the cryo-EM data lifecycle. Dive into these topics to gras...&quot;</p> <p><b>New page</b></p><div>{{DISPLAYTITLE:Core Concepts &amp; Workflow - CryoNAV Wiki}}<br /> &lt;!-- This page provides an overview of the Core Concepts &amp; Workflow section for CryoNAV. --&gt;<br /> <br /> &#039;&#039;&#039;Core Concepts &amp; Workflow in CryoNAV&#039;&#039;&#039;<br /> <br /> Understanding the core concepts and the overall data workflow within CryoNAV is crucial for effectively utilizing the software. This section explains the fundamental principles, data organization, and how CryoNAV supports the cryo-EM data lifecycle.<br /> <br /> Dive into these topics to grasp the fundamentals of CryoNAV:<br /> * [[CryoNAV_Data_Lifecycle|Cryo EM data lifecycle with CryoNAV]] - An overview of how CryoNAV manages data from sample preparation through to archiving.<br /> * [[CryoNAV_Key_Concepts|Key concepts in CryoNAV]] - Explanations of essential CryoNAV terms and entities, such as projects, datasets, and metadata standards.<br /> <br /> &lt;!-- Navigation back to the main page --&gt;<br /> ----<br /> Return to [[CryoNAV_Main_Page|CryoNAV Home]].<br /> <br /> [[Category:CryoNAV]]<br /> [[Category:Documentation Sections]]<br /> [[Category:Core Concepts]]<br /> [[Category:Workflow]]</div>

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