https://home.cryonav.org/index.php?action=history&feed=atom&title=CryoNAV_Data_Sharing_Archiving 2026-06-24T19:11:14Z Revision history for this page on the wiki MediaWiki 1.43.1 https://home.cryonav.org/index.php?title=CryoNAV_Data_Sharing_Archiving&diff=120&oldid=prev 2026-05-20T21:27:45Z

<p>Bot edit via cryonavedit.py: add interface screenshots</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en-GB"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 23:27, 20 May 2026</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l33">Line 33:</td> <td colspan="2" class="diff-lineno">Line 33:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Export into RELION .star files is planned, to facilitate handoff to sub-tomogram averaging pipelines. See [[CryoNAV About#Status and roadmap|Status and roadmap]].</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Export into RELION .star files is planned, to facilitate handoff to sub-tomogram averaging pipelines. See [[CryoNAV About#Status and roadmap|Status and roadmap]].</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[File:CryoNAV export.png|center|thumb|700px|The Export page: build reports, tabular exports, and ZIP bundles of selected data.]]</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== See also ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== See also ==</div></td></tr> </table>

Admin https://home.cryonav.org/index.php?title=CryoNAV_Data_Sharing_Archiving&diff=80&oldid=prev 2026-05-20T20:31:05Z

<p>Bot edit via cryonavedit.py: migrate to sidebar-target titles</p> <p><b>New page</b></p><div>CryoNAV provides reporting and export tools designed to consolidate everything known about a dataset, from acquisition conditions through processing provenance to final quality assessment, into a portable form.<br /> <br /> == Reports ==<br /> <br /> The &#039;&#039;&#039;Create Report&#039;&#039;&#039; function produces a detailed report for a grid or project, listing every tilt series with:<br /> <br /> * Acquisition parameters (voltage, pixel size, dose, tilt range, camera)<br /> * Full processing history (pipeline steps run, parameters used, software versions, outcomes)<br /> * Quality metrics derived from processing outputs (alignment residuals, CTF defocus values and fit quality, drift measurements)<br /> * User-assigned quality annotations (star ratings, tags, comments)<br /> <br /> These reports give a complete picture of a dataset&#039;s state, suitable for PI review, publication methods sections, or experimental records.<br /> <br /> == Excel and CSV export ==<br /> <br /> Tabular exports where each row represents a tilt series and columns capture acquisition metadata, processing parameters, computed quality metrics, and user ratings/tags.<br /> <br /> * &#039;&#039;&#039;Excel&#039;&#039;&#039;: preserves formatting, directly usable for sorting, filtering, and charting in spreadsheet software.<br /> * &#039;&#039;&#039;CSV&#039;&#039;&#039;: for compatibility with R, Python, and other analysis tools.<br /> <br /> == ZIP bundle archive ==<br /> <br /> Configurable packages where users select which data to include, for example:<br /> <br /> * Raw frames plus the processing parameters needed to reconstruct from scratch<br /> * Final tomogram volumes only<br /> * Denoised tomograms only<br /> * Any combination of the above<br /> <br /> The exported bundle includes the associated metadata in a structured directory layout, making it suitable for sharing tailored result sets with collaborators or creating comprehensive archival packages that preserve the complete data lineage.<br /> <br /> == Planned exports ==<br /> <br /> Export into RELION .star files is planned, to facilitate handoff to sub-tomogram averaging pipelines. See [[CryoNAV About#Status and roadmap|Status and roadmap]].<br /> <br /> == See also ==<br /> <br /> * [[CryoNAV Metadata Management|Metadata Management]]<br /> * [[CryoNAV Data Storage Backup|Data Storage &amp; Backup]]<br /> <br /> [[Category:Modules]]</div>

Admin