CryoNAV Interface Tour: Difference between revisions
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[[File:CryoNAV grids.png|center|thumb|800px|Project grids tab.]] | [[File:CryoNAV grids.png|center|thumb|800px|Project grids tab.]] | ||
The Grids tab lists the physical EM grids attached to the project, in the order they were imported via [[CryoNAV Tilt Series Data Collection Import|SmartScan]]. | The Grids tab lists the physical EM grids attached to the project, in the order they were imported via [[CryoNAV Tilt Series Data Collection Import|SmartScan]]. | ||
[[File:CryoNAV grid detail.png|center|thumb|800px|Grid detail page: acquisition parameters, tags, and the tilt-series list with status, rating, tags, and processing state.]] | |||
Clicking a grid opens its detail page: acquisition parameters (voltage, pixel size, camera, dose, tilt range, software, operator), per-grid tags and notes, and a tabular list of all tilt series collected on that grid with status, user rating, tags and processing state. The page also exposes the '''SearchMaps''' sub-tab for browsing the medium-magnification overviews and the spatial overlay of tilt series on them; see [[CryoNAV Grid Visualization Tools|Grid Visualization]] for atlas, search-map overlay, card view and list view. | |||
== Jobs == | == Jobs == | ||
Revision as of 23:12, 20 May 2026
A quick visual tour of the CryoNAV web interface. Screenshots are taken from an in-development build with mock data; labels and exact layouts may change before release.
Dashboard
The dashboard is the landing page after login. It shows the user's most recently active projects as cards (with tilt-series count and storage footprint) and a table of the most recent processing jobs across all projects.
Projects
The full project list, with owner, tilt-series count, and storage. Projects are the unit of access control (see Key Concepts). The New Project button creates an empty project that grids can then be imported into.
Clicking a project opens its detail page: tabs for Overview, Grids, and Jobs; the right-hand pane lists members and their roles. Tags can be added to projects and tilt series for filtering and reporting.
Grids
The Grids tab lists the physical EM grids attached to the project, in the order they were imported via SmartScan.
Clicking a grid opens its detail page: acquisition parameters (voltage, pixel size, camera, dose, tilt range, software, operator), per-grid tags and notes, and a tabular list of all tilt series collected on that grid with status, user rating, tags and processing state. The page also exposes the SearchMaps sub-tab for browsing the medium-magnification overviews and the spatial overlay of tilt series on them; see Grid Visualization for atlas, search-map overlay, card view and list view.
Jobs
The Jobs page shows running, completed and failed processing jobs across all projects the user can see. Each row gives job type (motion correction, alignment, CTF, reconstruction, denoising, ...), status, run time and links into the relevant tilt series or run record.
Storage
The Storage page summarises disk usage per project, broken down into raw data, intermediate processing files and final outputs. From here, intermediate files from superseded processing branches can be selectively deleted while retaining the raw frames and the database record (see Data Storage & Backup).
Admin: Compute backends
System administrators configure the available compute backends -- typically one or more SLURM partitions and a local-workstation backend. At job submission time the user picks which backend to run on; see Local and HPC execution for the dual-mode design.